Gary Stacey Publications

 

Publications:

 

  A. Book/ Journals  Edited:

 

          1.      Gresshoff, P., E. Roth, G. Stacey, and W.E. Newton. 1990. Nitrogen fixation: Achievements and Objectives. Chapman and Hall Publ., New York-London.

 

  1. Stacey, G., R.H. Burris, and H.J. Evans. 1991. Biological Nitrogen Fixation. Chapman and Hall Publ., New York-London.

 

  1. Stacey, G. and N. Keen. 1995. Plant-Microbe Interactions. Volume 1. Chapman and Hall Publ., New York-London.

 

  1. Stacey, G. and N. Keen. 1996. Plant-Microbe Interactions. Volume 2. Chapman and Hall Publ., New York-London.

 

  1. Stacey, G, B. Mullin, and P.M. Gresshoff. 1996. Biology of Plant-Microbe Interactions, International Society for Molecular Plant-Microbe Interactions, St. Paul, MN.

 

  1. Stacey, G. and N. Keen. 1997. Plant-Microbe Interactions. Volume 3. Chapman and Hall Publ., New York-London.

 

  1. Stacey, G. and N. Keen. 1999. Plant-Microbe Interactions, volume 4. American Phytopathological Society Press, St. Paul, MN.

 

  1. Stacey, G. and N. Keen. 2000. Plant-Microbe Interactions, volume 5. American Phytopathological Society Press, St. Paul, MN.

 

  1. Stacey, G. and N. Keen. 2003. Plant-Microbe Interactions, volume 6. American Phytopathological Society Press, St. Paul, MN

 

  1. VandenBosch, Kathryn A. and G. Stacey, editors. 2003. Plant Physiology special issue: Legumes. Am. Soc. Plant Biologists 131: 840-865.

 

  1. Nguyen, H. and G. Stacey, editors. 2003. Soybean biotechnology, AgBioforum   (http://www.agbioforum.org/; internet journal) volume 6 (issue 1+2)

 

  1. Stacey, G. and VandenBosch, Kathryn A., editors. 2005. Plant Physiology special issue: Legumes. Am. Soc. Plant Biologists vol. 137 (April, 2005)

 

  1. Stacey, G. (2007) Soybean Genomics, Springer (in preparation)

 

B. Journal Articles:

 

  1. Stacey, G., F.R. Tabita, and C. Van Baalen.  1977.  Isolation and characterization of Anabaena sp. capable of rapid growth on molecular nitrogen.  Arch. Microbiol.  114:197-201.

 

  1. Stacey, G., F.R. Tabita, and C. Van Baalen.  1977.  Nitrogen and ammonia assimilation in the cyanobacteria:  Purification of glutamine synthetase from Anabaena sp. CA.  J. Bacteriol.  132: 596-603.

 

  1. Stacey, G., C. Van Baalen, and F.R. Tabita.  1979.  Nitrogen and ammonia assimilation in the cyanobacteria:  Regulation of glutamine synthetase.  Arch. Biochem. Biophys.  194:457-467.

 

  1. Lepo, J.E., G. Stacey, O. Wyss, and F.R. Tabita.  1979.  The purification of glutamine synthetase from Azotobacter and other procaryotes by Blue Sepharose chromatography.  Biochem. Biophys. Acta  568:428-436.

 

  1. Stacey, G., P.J. Bottomley, C. Van Baalen, and F.R. Tabita.  1979.  Control of heterocyst and nitrogenase synthesis in cyanobacteria.  J. Bacteriol.  137:321-326.

 

  1. Stacey,G., A. Paau, and W.J. Brill.  1980.  Host recognition in the Rhizobium-soybean symbiosis.  Plant Physiol.  66:609-614.

 

  1. Stacey,G., J. Zhu, V. K. Shah, S.C. Shen, and W.J. Brill.  1982.  Intragenic complementation by the nifJ coded protein of Klebsiella pneumoniae.  J. Bacteriol.  150:293-297.

 

  1. Noel,K.D., G. Stacey, S. Tandon, L.E. Silver, and W.J. Brill.  1982. Mutants of Rhizobium japonicum defective in symbiotic nitrogen fixation.  J. Bacteriol. 152:485-494. 

 

  1. Stacey, G., A.S. Paau, K.D. Noel, R.J. Maier, L.E. Silver, and W.J. Brill.  1982.  Mutants of Rhizobium japonicum defective in nodulation.  Arch. Microbiol.  132:219-224.

 

  1. Shah, V.K., G. Stacey, and W.J. Brill.  1983.  Electron transport to nitrogenase:  Purification and characterization of pyruvate: flavodoxin oxidoreductase, the nifJ gene product.  J. Biol. Chem. 258:12064-12068.   

 

  1. Halverson, L.J. and G. Stacey.  1984.  Host recognition in the Rhizobium-soybean symbiosis.  Detection of a protein factor present in soybean root exudate which is involved in the nodulation process.  Plant Physiol. 74:84-89.

 

  1. Stacey, G.,L.A. Pocratsky, and V. Puvanesarajah.  1984.  A bacteriophage that can distinguish between wild-type Rhizobium japonicum and a non-nodulating mutant.  Appl. Env. Microbiol. 48: 68-72.

 

  1. Stacey, G. and G. Upchurch.  1984.  Rhizobium inoculation of legumes.  Trends in Biotechnology 2:65

 

  1. Halverson, L.J. and G. Stacey.  1985.  Lectin involvement in the nodulation of soybean. Plant Physiology 77:621-625. 

 

  1. Russell, P., M. Schell, K. Nelson, L.J. Halverson, K. Sirotkin and G. Stacey. 1985.  Isolation and characterization of the DNA region encoding nodulation functions of Rhizobium japonicum strain 3I1b110. J. Bacteriol. 164:1301-1308.

 

  1. Puvanesarajah, V., F.M. Schell, G. Stacey, C.J. Douglas, and E.W. Nester. 1985.  A  role for ß-2 glucan in the virulence of Agrobacterium tumefaciens. J. Bacteriol. 164:102-106. 

 

  1. Halverson, L.J. and G. Stacey.  1986.  The effect of lectin on nodulation by wild-type Bradyrhizobium japonicum and a nodulation defective mutant. Appl. Environ. Microbiol. 51:753-760

 

  1. Hodgson, A.L.M. and G. Stacey. 1986.  Potential for Rhizobium improvement.  CRC Crit. Rev. Biotechnol. 4:1-74. 

 

  1. Halverson, L.J. and G. Stacey.  1986.  Signal Exchange in Plant-Microbial Interactions.  Microbiol. Rev. 50:193-225. 

 

  1. So, J.S., A. Hodgson, R. Haugland, M. Leavitt, Z. Banfalvi, A.J. Nieuwkoop, and G. Stacey.  1986.  Transposon induced symbiotic mutants of Bradyrhizobium japonicum:  isolation of two gene regions essential for nodulation.   Mol. Gen. Genet. 207:15-23.

 

  1. Nieuwkoop, A.J., Z. Banfalvi, N.Deshmane, D. Gerhold, M.G. Schell, K.M. Sirotkin, and G. Stacey.  1987.  A locus encoding host range is linked to the common nodulation genes of Bradyrhizobium japonicum.  J. Bacteriol. 169:2631-2638. 

 

  1. Puvanesarajah, V., F.M. Schell, and G. Stacey. 1987.  Characterization of cell surface polysaccharides from Bradyrhizobium japonicum and a non-nodulating mutant.  J. Bacteriol. 169:137-141. 

 

         23.  Roth, E.,J. R. Dunlap, and  G. Stacey. 1987.  Localization of aluminum in soybean bacteroids and seeds. Appl. Environ. Microbiology. 53:2548-2553.

 

  1. Cangelosi, G.A., L. Hung, V. Puvanesarajah, G. Stacey, D.A. Ozga, J.A. Leigh, and E.W. Nester.  1987.  Common loci for exopolysaccharide synthesis in Agrobacterium tumefaciens and Rhizobium meliloti, and their roles in plant interactions.  J. Bacteriol. 169:2086-2091

 

  1. Banfalvi, Z., M. G. Schell, A. Nieuwkoop, L. Besl, and G. Stacey. 1988.  Regulation of nod gene expression in Bradyrhizobium japonicum.  Mol. Gen. Genet. 214:420-424. 

 

  1. Gerhold, D., G. Stacey, and A. Kondorosi.  1989.  Use of synthetic "Nod Box" probe to identify two nodulation operons in Rhizobium meliloti.  Plant Mol. Biol., 12:181-188. 

 

  1. Deshmane, N. and G. Stacey. 1989. Identification of Bradyrhizobium nod genes involved in host specific nodulation. J. Bacteriol. 171: 3324-3330.

 

  1. Roth, L.E. and G. Stacey. 1989. Bacterium release into host cells of nitrogen fixing soybean nodules: The symbiosome membrane comes from three sources. Eur. J. Cell Biol. 49:13-23.

 

  1. Roth, L.E. and G. Stacey. 1989. Cytoplasmic membrane systems involved in bacterium release into soybean nodule cells as studied with two Bradyrhizobium japonicum mutant strains. Eur. J. Cell Biol. 49:24-32.

 

  1. Johnson, D., E. Roth, and G. Stacey. 1989. Immunogold localization of the NodC and NodA proteins of Rhizobium meliloti. J. Bacteriol. 171:4583-4588

 

  1. Mayer, H., J.H. Krauss, T. Urbanik Sypniewsku, V. Puvanesarajah, G. Stacey, and G. Auling.  1989.  Lipid A with 2, 3-diamino-dideoxy-glucose in lipopolysaccharides from slow-growing members of Rhizobiaceae and from Pseudomonas carboxydovorans.  Arch. Microbiol.  151:111-116.

 

  1. Hatterman, D.R. and G. Stacey. 1990.  Efficient tranformation of Bradyrhizobium japonicum by electroporation.  Appl. Env. Microbiol.  56:833-836.

 

  1. Wang, S.P. and G. Stacey. 1990.  Ammonia regulation of nod gene expression in Bradyrhizobium japonicum.  Mol. Gen. Genet. 223:329-331.

 

  1. Sadowsky, M.J., P.B. Cregan, M. Gottfert, A. Sharma, D. Gerhold, F. Rodriquez-Quinones, H.H. Keyser, H. Hennecke, and G. Stacey. 1991. The Bradyrhizobium japonicum nolA gene and its involvement in the genotype-specific nodulation of soybeans.  Proc. Natl. Acad. Sci. USA 88: 637-641.

 

        35.  Weaver, D.C., B. Crombie, G. Stacey, and D.M. Roberts. 1991. Calcium-dependent phosphorylation of membrane proteins from nitrogen-fixing soybean nodules: Evidence for

             phosphorylation of nodulin 26. Plant Physiol. 95: 222-227.

 

  1. Oh,S.-H., L. Besl, G. Stacey, and D.M. Roberts. 1991. Analysis of a calmodulin mutant defective in methylation in transgenic plants. FASEB J. 5: A449.

 

  1. Stacey, G., J.-S. So, L. E. Roth, B. Lakshmi S.K. and R. W. Carlson. 1991. A lipopolysaccharide mutant of Bradyrhizobium japonicum that uncouples bacterial from plant differentiation.  Mol. Plant-Microbe Int. 4: 332-340.

 

  1. Wang, S.-P. and G. Stacey. 1991. Studies of the Bradyrhizobium japonicum nodD1 gene promoter: A repeated structure for the nod box. J. Bacteriol. 173: 3356-3365.

 

  1. Gresshoff, P.M., L.E. Roth, and G. Stacey. 1991. 8th International Congress on Nitrogen Fixation-Meeting Report. Plant Mol. Biol. Rep. 9:37-42.

 

  1. Cunningham, S., W.D. Kollmeyer and G. Stacey. 1991. The chemical control of interstrain competition for soybean nodulation by Bradyrhizobium japonicum. Appl. Env. Microbiol. 57: 1886-1892.

 

  1. Barbour, M., D. Hatterman, and G. Stacey. 1991. Chemotaxis of Bradyrhizobium japonicum to soybean exudates. Appl. Env. Microbiol. 57: 2635-2639.

 

  1. Spaink, H.P., A. Aarts, G. Stacey, G. V. Bloemberg, B.J.J. Lugtenberg, and E.P. Kennedy. 1991. Detection and separation of Rhizobium and Bradyrhizobium Nod metabolites using thin layer chromatography. Mol. Plant-Microbe Int. 5: 72-80.

 

  1. Smit, G., V. Puvanesarajah, R.W. Carlson, W. M. Barbour and G. Stacey. 1992.  Bradyrhizobium japonicum nodD1 can be specifically induced by soybean flavonoids that do not induce the nodYABCSUIJ operon. J. Biol. Chem. 267: 310-318.

 

  1. Sanjuan, J., H. Spaink, R. Carlson, R. Bhat, J. Gluska, M. Barbour, and G. Stacey. 1992. A 2-O-methylfucose moiety is present on the lipo-oligosaccharide nodulation signal of Bradyrhizobium japonicum. Proc. Natl. Acad. Sci. USA 89: 8789-8793.  

 

  1. Roberts, D.M., L. Besl, S.-K. Oh, R. V. Masterson, J. Schell, and G. Stacey. 1992. Expression of a calmodulin methylation mutant affects the growth and development of transgenic tobacco plants. Proc. Natl. Acad. Sci. USA 89: 8394-8398.

 

  1. Stokkermans, T.J.W., J. Sanjuan, X. Ruan, G. Stacey, and N.K. Peters. 1992. Bradyrhizobium japonicum rhizobitoxine mutants with altered host range on Rj4 soybeans. Mol. Plant-Microbe Int. 5: 504-512.

 

  1. Stacey, G., P.M. Gresshoff, and N. Keen. 1992. Friends and Foes: New Insights into Plant-Microbe Interactions. The Plant Cell 4: 1173-1179.

 

        48.  Rice, S.A., J. Bieber, J.-Y. Chun, G. Stacey, and B.C. Lampson. 1993. Diversity of retron elements in rhizobia and other Gram negative bacteria. J. Bacteriol. 175: 4250-4254.

 

  1. Schmidt, J., H. Rohrig, M. John, U. Wieneke, G. Stacey, C. Koncz, and J. Schell. 1993. Alteration of plant growth and development by Rhizobium nodA and nodB genes involved in the synthesis of oligosaccharide signal molecules. The Plant Journal 4: 651-658.

 

  1. Carlson, R.W., J. Sanjuan, U.R. Bhat, J. Glushka, H. Spaink, A.H.M. Wijfjes, A.A.N. van Brussel, T. J.W. Stokkerman, K. Peters, and G. Stacey. 1993. The structures and biological activities of the lipo-oligosaccharide nodulation signals produced by type I and type II strains of Bradyrhizobium japonicum.  J. Biol. Chem. 268: 18372-18381.

 

  1. Luka, S., J. Sanjuan, R. W. Carlson and G. Stacey. 1993. nolMNO genes of Bradyrhizobium japonicum are co-transcribed with nodYABCSUIJ and nolO is involved in the synthesis of the lipo-oligosaccharide nodulation signals. J. Biol. Chem.268: 27053-27059.

 

  1. Sanjuan, J., P. Groβ, M. Gottfert, H. Hennecke, and G. Stacey. 1994. NodW is essential for full expression of the common nodulation genes in Bradyrhizobium japonicum.  Mol. Plant-Microbe Int. 7: 364-369.

 

  1. Stacey, G., S. Luka, J. Sanjuan, Z. Banfalvi, A.J. Nieuwkoop, J.Y. Chun, L.S. Forsberg, and R. Carlson. 1994. nodZ, a unique host-specific nodulation gene, is involved in the fucosylation of the lipo-oligosaccharide nodulation signal of Bradyrhizobium japonicum. J. Bacteriol. 176: 620-633.

 

  1. Dockendorff, T., A. Sharma, and G. Stacey. 1994. Identification and characterization of the nolYZ genes of Bradyrhizobium japonicum. Mol.Plant-Microbe Int. 7: 173-180.

 

  1. Chun, Jong-Yoon and G. Stacey. 1994. A Bradyrhizobium japonicum gene essential for nodulation competitiveness is differentially regulated from two promoters. Mol. Plant-Microbe Int. 7: 248-255.

 

  1. Dockendorff, T., J. Sanjuan, P. Groβ, and G. Stacey. 1994. NolA represses nod gene expression in Bradyrhizobium japonicum. Mol. Plant-Microbe Int. 7:596-602.

 

  1. Steiner, H.-Y., W. Song, L. Zhang, F. Naider, J.M. Becker, and G. Stacey. 1994. An Arabidopsis transporter is a member of a novel family of membrane transport proteins. Plant Cell 6: 1289-1299. [Correction: Plant Cell 12: 2295] 

 

  1. Chun, J.-Y., G. Sexton, E.Roth, and G. Stacey. 1994. Identification and characterization of a novel Bradyrhizobium japonicum gene involved in host-specific nitrogen fixation. J. Bacteriol. 176: 6717-6729.

 

  1. Carlson, R.W., N.P.J. Price, and G. Stacey. 1994. The biosynthesis of rhizobial lipo-oligosaccharide nodulation signal molecules. Mol. Plant-Microbe Int. 7: 684-695. 

 

  1. Stacey, G., J. Sanjuan, S. Luka, T. Dockendorff, and R.W. Carlson. 1995. Signal exchange in the Bradyrhizobium-soybean symbiosis. Soil Biol. Biochem. 27: 473-483.

 

  1. Qian, D., F.L. Allen, G. Stacey, and P.M. Gresshoff. 1995. Plant genetic study of restricted nodulation in soybean. Crop Science 36: 243-249.

 

  1. Stokkermans, T.J.W., S. Ikeshita, J. Cohn, R.W. Carlson, G. Stacey, T. Ogawa, and N.K. Peters. 1995. Structural requirements of synthetic and natural product lipo-oligosaccharides to induce nodule primordia on Glycine soja. Plant Physiol. 108: 1587-1595.

 

  1. Stacey, G. 1995. Minireview: Bradyrhizobium japonicum nodulation genetics. FEMS Microbiol. Lett. 127: 1-9.

 

  1. Yuhashi, K.-I., S. Akao, H. Fukuhara, E. Tateno, J.-Y. Chun, G. Stacey, H. Hara, M. Kubota, T. Asami, and K. Minamisawa. 1995. Outer cortex swelling in soybean roots caused by Bradyrhizobium elkanii. Plant Cell Physiol. 36: 1571-1577.

 

  1. Song, W., H.-Y. Steiner, L. Zhang, F. Naider,  G. Stacey, and J. Becker. 1996. Cloning of a second Arabidopsis peptide transport gene. Plant Physiol. 110: 171-178.

 

  1. Yuen, J.P.-Y., S.T. Cassini, T.T. de Oliveira, T.J. Nagem, and G. Stacey. 1996. Xanthone induction of nod gene expression in Bradyrhizobium japonicum. Symbiosis 19: 131-140.

 

  1. Minami, E., H. Kouchi, J. R. Cohn, T. Ogawa, and G. Stacey. 1996. Expression of the early nodulin, ENOD40, in soybean roots in response to various lipo-chitin signal molecules. Plant J. 10: 23-32.

 

  1. Minami, E., H. Kouchi, R.W. Carlson, J.R. Cohn, V.K. Kolli, R.B. Day, T. Ogawa, and G. Stacey. 1996.Cooperative action of lipo-chitin nodulation signals on the induction of the early nodulin, ENOD2, in soybean roots. Mol. Plant-Microbe Int. 9: 574-583. 

 

  1. Yuen, J. P.-Y. and G. Stacey. 1996. Inhibition of nod gene expression in Bradyrhizobium japonicum by organic acids. Mol. Plant-Microbe Int. 9: 424-428.

 

  1. Garcia, M.L., J. Dunlap, J. Loh, & G. Stacey. (1996) Regulation and phenotypic characterization of the nolA gene of Bradyrhizobium japonicum. Mol. Plant-Microbe Int. 9: 625-636.

 

  1. Lopez-Lara, I.M., L.Blok-Tip, C. Quinto, M.L. Garcia, G. Stacey, G.V. Bloemberg, G.E.M. Lamers, B.J.J. Lugtenberg, J.E. Thomas-Oates, and H.P. Spaink. 1996. The nodZ gene of Bradyrhizobium extends the nodulation host range of Rhizobium by adding a fucosyl residue to nodulation signals. Mol. Microbiol.  21: 397-408.

 

  1. Hungria, H., C.Y.M. Nishi, J. Cohn, and G. Stacey. 1996. Comparison between parental and variant soybean Bradyrhizobium strains with regard to the production of lipo-chitin nodulation signals, early stages of root infection, competitiveness and efficiency of nitrogen fixation.  Plant and Soil 186: 331-341.

 

        73.  Dunlap, J.,  E.  Minami,  A.A. Bhagwat, D. Keister, and G. Stacey. 1996. Nodule development induced by mutants of Bradyrhizobium japonicum defective in cyclic ß-2 glucan

             synthesis. Mol. Plant-Microbe Int. 9: 546-555.

 

  1. Hungria, M. and G. Stacey. 1997. Molecular signals exchanged between host plants and rhizobia: Basic aspects and potential application in agriculture. Soil Biol. Biochem. 29: 819-830.

 

  1. Luka, S. and G. Stacey. 1997. Molecular studies on a new genetic locus linked to the common nodulation genes in Bradyrhizobium japonicum. FEMS Lett.148: 145-151.

 

  1. Song, W., S. Koh, M. Czako, L. Marton, E. Drenkard, J.M. Becker, and G. Stacey. 1997. Anti-sense expression of the peptide transport gene, AtPTR2B, delays flowering and arrests seed development in transgenic Arabidopsis plants. Plant Physiol. 114: 927-935.

 

  1. Loh, J., M. Garcia, and G. Stacey. 1997. NodV and NodW, a second flavonoid recognition system regulating nod gene expression in Bradyrhizobium japonicum. J. Bacteriol. 179: 3013-3020.

 

  1. Day, R.B., J. Loh, J. Cohn, J. P.-Y. Yuen, and G. Stacey. 1997. Rhizobium-legume interactions: Regulation, perception and prospects. Newsletter 9, The Institute of Genetic Ecology, Tohoku University, pp. 1-5.

 

  1. Stacey, G. and N. Shibuya. 1997. Chitin recognition in rice and legumes. Plant and Soil 194: 161-169.

 

  1. Cohn, J., R.B. Day, and G. Stacey. 1997. Legume nodule organogenesis. Trends in Plant Sci. 3: 105-110.

 

  1. Etzler ME, Murphy JB, Ewing NN, Kalsi G, Stacey G, Day BD, Roberts NJ, 1997. A novel root lectin/apyrase: A candidate for a receptor in plant oligosaccharide signaling events. Glycobiology 7: 13-13 (meeting abstract)

 

  1. Lohrke, S. L., B. Day, V. K. Kolli, R. Hancock, J. P.-Y. Yuen, M. L. de Souza, G. Stacey, R. Carlson, Z. Tong, H.-G. Hur,  J. H. Orf, and M. J. Sadowsky. 1998. The Bradyrhizobium japonicum noeD gene: a negatively-acting, genotype-specific nodulation gene for soybean. Molec. Plant-Microbe Interact. 11: 476-488.

 

  1. Stapleton, R.D., D.C. Savage, G.S. Sayler, and G. Stacey. 1998. Biodegradation of aromatic hydrocarbons in an extremely acidic environment. Appl. Env. Microbiol. 64: 64: 4180-4184.

 

  1. Loh, J., M.G. Stacey, M.J. Sadowsky, and G. Stacey. 1999. The Bradyrhizobium japonicum nolA gene encodes three functional distinct proteins.  J. Bacteriol. 181: 1544-1554.

 

  1. Cohn, J., T. Stokkermans, V. K. Kolli, R. B. Day, J. Dunlap, R. Carlson, K. Peters, and G. Stacey. 1999. A Bradyrhizobium japonicum nodZ mutant is able to nodulate Vigna umbellata via the action of multiple nod signals.  Mol. Plant-Microbe Int. 12: 766-773.

 

  1. Moul Dey, Swapan K. Datta, Lina B. Torrizo, Pallavolu M. Reddy, Jagdish K. Ladha, Bradley Day, Gary Stacey. 1999. Integration into rice of a soybean apyrase gene proposed to play a central role in nodulation. Rice Genetics Newletter 16: 145.

 

  1. Lin, C.-M., S. Koh, G. Stacey, S.-M. Yu, T.-Y. Lin, and Y.-F. Tsay. 2000. Cloning and functional characterization of a constitutively expressed nitrate transporter gene OsNRT1 from rice. Plant Physiology 122: 379-388.

 

  1.  Day, R.B., C. McAlvin, J. Loh, R. L. Denny, T.Wood, N. Young, and G. Stacey. 2000. Differential expression of two soybean apyrases; one of which is an early nodulin. Molecular-Plant Microbe Interactions 13: 1053-1070.

 

  1. So, J.-S., W.-S. Kim and G. Stacey. 2000. Molecular characterization of a gene region involved in lipopolysaccharide biosynthesis in Bradyrhizobium japonicum: cloning, sequencing and expression of rfaF gene. FEMS Microbiol. Lett. 190: 109-114.

 

  1. Day, R.B., M. Okada, Y. Ito, N. K. Tsukada, H. Zaghouani, N. Shibuya, and G. Stacey. 2001. Binding site for chitin oligosaccharides in the soybean plasma membrane. Plant Physiol. 126: 1162-1173.

 

  1. Hye-Sook Oh, Jong-Yoon Chun, Gary Stacey, Myung-Sok Lee, Kyung-Hee Min, Eun-Sook Song, and Choong-Ill Cheon. 2001. The Bradyrhizobium japonicum hsfA gene exhibits a unique developmental expression pattern in nodules. Mol. Plant-Microbe Int. 14: 1286-1292.

 

  1.  Cohn, J., Taesik Uhm, S. Ramu, Y.-W. Nam, D.-J. Kim, V. Penmetsa, T. Wood, R. L. Denny, N.D. Young, D. Cook, and G. Stacey. 2001. Differential expression of a family of apyrase genes from Medicago truncatula. Plant Physiol. 125: 2104-2119

 

  1.  Koh, S., A.M. Wiles, J.S. Sharp, F.R. Naider, J.M. Becker, and G. Stacey. 2002. An oligopeptide transporter gene family in Arabidopsis thaliana  Plant Physiol. 128: 21-29.

 

  1. Loh, J. and G. Stacey. 2001. Feedback regulation of the Bradyrhizobium japonicum nodulation genes. Mol. Microbiol. 41: 1357-1364.

 

  1. Tomkins, J.P., T. Wood, J. Loh, M. Stacey, A. Judd, S.S. Woo, D.A. Frisch, G. Stacey, M. Sadowsky and R. Wing. 2001. A Marker-Dense Physical Map of the Bradyrhizobium japonicum Genome. Genome Research  11: 1434-1440.

 

  1. Loh, J., J-P. Y. Yuen-Tsai, M.G. Stacey, A. Welborn and G. Stacey. 2001. Population-dependent regulation of Bradyrhizobium japonicum nodulation gene expression. Mol. Microbiol. 42: 37-46.

 

  1. Loh, J., D.P. Lohar, B. Andersen, and G. Stacey. 2002. A two-component regulator mediates population-density-dependent expression of the Bradyrhizobium japonicum nodulation genes. J. Bacteriol. 184: 1759-1766.

 

  1.  Stacey, G., S. Koh , C. Granger, and J. M. Becker. 2002. Peptide transport in plants. Trends in Plant Science 7: 257-263.

 

  1. Ramonell, K., B. Zhang, R. Ewing, Y. Chen, D. Xu, G. Stacey, and S. Somerville. 2002 Microarray analysis of chitin elicitation in Arabidopsis thaliana. Mol. Plant Pathol. 3 (1): 301-311. (note: article was among top 10 downloads at the journal website in 2002.)

 

  1. Zhang, B., K. Ramonell, S. Somerville, and G. Stacey. 2002. Characterization of Early, Chitin-Induced Gene Expression in Arabidopsis Mol. Plant-Microbe Int. 15: 963-970.

 

  1. Loh, J, E. A. Pierson, L. S. Pierson III, G. Stacey, and Arun Chatterjee.  2002. Quorum sensing in plant-associated bacteria. Curr. Op. Plant Biol. 5: 285-290.

 

  1. Loh, J., R.W. Carlson, W.S. York, and G. Stacey. 2002. Bradyoxetin, a unique chemical signal involved in symbiotic gene regulation. Proc. Natl. Acad. Sci. USA 99: 14446-14451.

 

  1. Stacey, M.G., S. Koh, J.M. Becker, and G. Stacey. 2002. AtOPT3, a member of the oligopeptide transporter family, is essential for embryo development in Arabidopsis. Plant Cell 14(11): 2799-2811.

 

  1. Loh, J., and G. Stacey. 2003. Nodulation gene regulation in Bradyrhizobium japonicum: A unique integration of global regulatory circuits. (invited minireview) Appl. Environ. Microbiol. 69: 10-17

 

  1. VandenBosch, Kathryn and Gary Stacey (2003) Summaries of Legume Genomics Projects from Around the Globe: Community Resources for Crops and Models. Plant Physiology 131: 840-865.

 

  1. VandenBosch K and G Stacey G (2003) Advances in legume biology. Plant Physiol. 131: 839-839. 

 

  1. Bartsev, Alexander V., William J. Deakin, Nawal M. Boukli, Crystal McCalvin, Pia  Malnoë,  Gary Stacey, William J. Broughton and Christian Staehelin (2004) NopL, an effector protein of Rhizobium sp. NGR234, thwarts activation of plant defense reactions. Plant Physiol. 134: 871-879

 

  1. Cannon, Steven B., W. Richard McCombie, Satoshi Tabata, Roxanne Denny, Lance Palmer, Manpreet Katari,  Nevin D. Young, Gary Stacey (2003) Evolution and microsynteny of the apyrase gene family in three legume genomes Mol. Gen. Genomics 270: 347-361.

 

  1. Kalsi, G; Roberts, NJ; Day, RB; Stacey, G; Etzler, ME. 2004. Expression of Dolichos biflorus LNP in Lotus japonicus broadens its host-strain specificity. Glycobiology 14 (11): 1130-1130.

 

  1. Wan, Jinrong, Shuqun Zhang, and Gary Stacey. 2004.  Activation of a potential mitogen-activated protein kinase pathway in Arabidopsis by chitin. Mol. Plant Pathol. 5(1): 125-135.

 

  1. Stacey, Gary, Lila Vodkin, Wayne A. Parrott and Randy C. Shoemaker. 2004. National Science Foundation-Sponsored Workshop Report: Draft Plan for Soybean Genomics. Plant Physiol. 135: 59-70

 

  1. Chiang, Chien-Sung, Gary Stacey, and Yi-Fang Tsay. 2004. Mechanisms and functional properties of two peptide transporters, AtPTR2 and fPTR2. J. Biol. Chem. 279: 30150-30157.

 

  1. Clough, S.,J. Zou,  J. Wan, C.B. McCalvin, R.T. Shealy, R. Philip, S.-Y. Kim, L.O. Vodkin and G. Stacey. 2004. Gene expression profiling of early nodulation in soybean. Mol. Plant-Microbe Int. (in revision)

 

  1. Wan, J., M. Torres, A. Ganapathy, J. Thelen, B. B. DaGue, B. Mooney, D. Xu, and G. Stacey. 2005. Proteomic analysis of soybean root hairs after infection by Bradyrhizobium japonicum. Mol. Plant-Microbe Int. 18: 458-467

 

  1. Sreevidya, V.S., Hernandez-Oane, R.J., So, R.B., Sullia, S.B., Stacey, G., Ladha, J.K., and Reddy, P.M. (2005) Expression of the legume symbiotic lectin genes psl and gs52 promotes rhizobial colonization of roots in rice. Plant Science 169 (2005) 726–736

 

  1. McAlvin, C.B. and Stacey, G. (2005) Transgenic expression of the soybean apyrase in Lotus japonicus enhances nodulation. Plant Physiol. 137: 1456-1462

 

  1. Stacey, G. and VandenBosch, K (2005) Editorial. “Translational” legume biology. Models to crops. Plant Physiol. 137: 1.

 

  1. Stacey MG, Osawa H, Patel AJ, Gassmann W, and Stacey G (2005) Expression analyses of Arabidopsis oligopeptide transporters during seed germination, vegetative growth and reproduction. Planta 223: 291-305

 

  1. Ramonell K, Berrocal-Lobo M, Koh S, Wan J, Edwards H, Stacey G and Somerville S. 2005. Loss-of-function mutations in four chitin responsive genes show increased susceptibility to the powdery mildew pathogen, Erysiphe cichoracearum. Plant Physiol. 138: 1027-1036

 

  1. Subramanian S, Stacey G, Yu Oliver (2006) Endogenous isoflavones are essential for the establishment of symbiosis between soybean

            and Bradyrhizobium japonicum. Plant J. 48: 261-273.

 

  1. Osawa H, Stacey G, Gassmann W (2006) ScOPT1 and AtOPT4 function as proton-coupled oligopeptide transporters with broad but distinct substrate specificities. Biochem. J. 393: 267-275

 

  1. Stacey G, Libault M, Brechenmacher L, Wan J, May GD (2006) Genetics and functional genomics of legume nodulation. Curr. Opin. Plant Biol. 9: 110-121. 

 

  1. Nunberg A, Bedell JA, Budiman MA, Citek RW, Clifton SW, Fulton L, Pape D, Cai Z, Joshi T, Nguyen H, Xu D, Stacey G (2006) Survey sequencing of soybean elucidates the genome structure and composition. Functional Plant Biol. 33: 765-773.

 

  1. Kim, Sung-Yong Kim, Mayandi Sivaguru and Gary Stacey (2006) Evidence for Extracellular ATP in plants: Localization and functional Significance in root hair growth and signaling. Plant Physiol. 142: 984-992

 

  1. Song, Z., Chen, L, Ganapathy, A., Wan, X-F, Brechenmacher, L., Tao, N., Emerich, D., Stacey, G, Xu, Dong (2006) Development and assessment of scoring functions for protein identification using peptide mass fingerprinting data. Electrophoresis 28: (in press)

 

  1. Stacey, G, McAlvin, C.B., Kim, S-Y, Olivares, J., Soto, M.J. (2006) Effects of endogenous salicylic acid on nodulation in the model legumes Lotus japonicus and Medicago truncatula. Plant Physiol. 141: 1473-1481.

 

  1. Libault M, Wan J, Joshi T, Zhang X, Czechowski T, Xu D, Udvardi M, Stacey G (2007) Identification of 118 Arabidopsis transcription factor and 30 ubiquitin ligase genes involved in plant defense via chitin signaling. . Mol. Plant-Microbe Int. (in press)

 

  1. Jackson SA, Rokhsar D, Stacey G, Shoemaker RC, Schmutzx J, Grimwood J (2006) Toward a Reference Sequence of the Soybean Genome: A Multiagency Effort. Crop Sci. Plant Genome Suppl. 46, suppl. 1: S55-S61.

 

  1.  Jackson SA, Wing RA, Stacey G, May G, Shoemaker RC (2007) SoyMap: an integrated map of soybean for resolution and dissection of multiple genome duplication events. Soybean Genetics Newsletter 33: published on-line at www.soygenetics.org.

 

  1. Stacey G, Dorrance A, Nguyen H, Pantalone V, Parrott W, Shoemaker R, Sleper D (2006) SoyCAP: Roadmap for soybean translational genomics. Soybean Genetics Newsletter 33: published on-line at www.soygenetics.org.

 

  1. Zhang X-C, Wu X, Findley S, Wan J, Libault M, Nguyen HT, Cannon SB, Stacey G (2007) Characterization of plant LysM domains and molecular evolution and comparative genomics of plant LysM type receptor-like kinases. Plant Physiol. (in press)

 

  1. Subramanian S, Stacey G, Yu O (2007) Distinct, critical roles of flavonoids during determinate and indeterminate legume nodulation. Trends in Plant Science (in press)

 

  1. Mathieu M, Wan J, Huang S, Somers D, Stacey G (2007) Knockout of a putative strictosidine synthase gene leads to male sterility in soybean.  (submitted).

 

  1. Wan J, Patel A, Mathieu M, Kim S-Y, Xu D, Stacey G (2007) A lectin receptor-like kinase is required for pollen development in Arabidopsis. (submitted)

 

  1. Eric Giraud, Lionel Moulin, David Vallenet, Valérie Barbe, Eddie Cytrin, Jean-Christophe Avarre, Marianne Jaubert, Damien Simon, Fabienne Cartieaux, Yves Prin, Gilles Bena, Laure Hannibal, Joel Fardoux, Mila Kojadinovic, Laurie Vuillet, Aurélie Lajus, Stéphane Cruveiller, Zoe Rouy, Sophie Mangenot, Béatrice Segurens, Carole Dossat, William L. Franck, Woo-Suk Chang, Elizabeth Saunders, David Bruce, Paul Richardson, Philippe Normand, Bernard Dreyfus, David Pignol, Gary Stacey, David Emerich, André Verméglio, Claudine Medigue, and Michael Sadowsky. (2007) Rhizobial Nod factors are not universally required for legume nodulation. Science (in press)

 

  C. Book Chapters

 

  1. Stacey,G. and W.J. Brill.  1982.  Nitrogen fixation by root inhabiting or infecting bacteria.  In Mount, M.S. and G.H. Lacy (eds.) Phytopathogenic Prokaryotes, Academic Press.

 

  1. Halverson, L.J. and G. Stacey. 1984.  Phenotypic reversal of a mutation in Rhizobium japonicum causing defective nodule initiation. In Veeger, C. and W.E. Newton (eds.) Advances in Nitrogen Fixation Research, Nyhoff Publ., The Hague, Wageningen.

 

  1. Sayler, G. and G. Stacey. 1985.  Methodology for biorisk evaluation:  Evaluation of organism properties. In The suitability and applicability of risk assessment methods for environmental applications of biotechnology. Covello, V.T. and J.R. Fiksel, eds. National Science Foundation, Washington, D.C.

 

4.      Stacey, G. 1985. The Rhizobium Experience. pp. 109-121. In Halvorson, H.O., D. Pramer, and M. Rogol (eds.). Engineered Organisms in the Environment: Scientific Issues. American Society for Microbiology, Washington, D.C.

 

  1. Halverson, L.J., D.L. Gerhold, S. Auger, and G. Stacey. 1985.  Lectin induction of nodulation competence in Bradyrhizobium japonicum. In Evans, H.J, P.J. Bottomley, and W.E. Newton (eds.). Nitrogen Fixation Research Progress. Martinus Nijhoff Publ., Dordrecht, The Netherlands.

 

  1. Deshmane, N., R. Haugland, A. Hodgson, M. Leavitt, A.J. Nieuwkoop, R. Pastian, P. Russell, M. Schell, K. Sirotkin, J.S. So, and G. Stacey. 1985.  Molecular characterization of the nodulation region from Bradyrhizobium japonicum.  ibid.

 

  1. Stacey, G., L.J. Halverson, T. Nieuwkoop, Z. Banfalvi, M.G. Schell, D. Gerhold, N. Deshmane, J.S. So, and K.M. Sirotkin.  1986.  Nodulation of soybean:  Bradyrhizobium japonicum physiology and genetics.  In Lugtenberg, B (ed.) Recognition in Microbe Plant Symbiotic and Pathogenic Interactions.  Springer-Verlag, Berlin.

 

  1. Stacey, G., A.J. Nieuwkoop, Z. Banfalvi, J.S. So, N. Deshmane, M.G. Schell, and D. Gerhold.  1987.  Molecular genetics of nodulation of soybean by Bradyrhizobium japonicum.  In Verma, D.P.S. and N. Brisson (eds.), Molecular Genetics of Plant  Microbe Interactions, Martinus-Nijhoff Publ., Dordrecht, pp.197-201.

 

  1. Stacey, G. 1988. The molecular genetics of symbiotic nitrogen fixation, p. 262, In Phillips, M., S.P. Shoemaker, R. D. Middlekauff, and R.M. Ottenbrite (eds.) The Impact of Chemistry on Biotechnology, Multidisciplinary Discussions. American Chemical Society, Washington, D.C.

 

  1. Sayler, G. and G. Stacey. 1986.  Methods for evaluation of microorganism properties. pp. 35-55.  In Fiksel, J. and V.T. Covello (eds.) Biotechnology Risk Assessment:  Issues and Methods for Environmental Introductions.  Pergamon Press, N.Y.

 

  1. Stacey, G., Z. Banfalvi, D. Goyeau, and M.G. Schell. 1988. Host regulation of nodulation gene expression in Bradyrhizobium japonicum. In Keen, N., T. Kosuge, and L.L. Walling (ed). Physiology and Biochemistry of Plant-Microbe Interactions. American Society of Plant Physiology.

 

  1. Banfalvi, Z., D. Goyeau, M. Schell, and G. Stacey.  1988.  Host induction of the nodulation genes of Bradyrhizobium japonicum.  p. 458.  In. Bothe, H., F. de Bruijn, and W. W. Newton (eds.), Nitrogen fixation: Hundred Years After, Gustav Fischer, Stuttgart.

 

  1. Banfalvi, Z., M. Schell, N. Beshmane, A. Nieuwkoop, A. Kondorosi, and G. Stacey.  1988.  p. 482.  A. Bradyrhizobium japonicum gene which directs nodulation of siratro and selected soybean cultivars.  ibid.

 

        14.  Roth, E., C. Sengupta-Gopalan, D. Johnson, J. Schmidt, M. John, and G. Stacey.  1988.  Cytoplasmic characteristics of soybean nodules formed by transposon induced mutants of     

               Bradyrhizobium japonicum.  p. 532.  In ibid.

 

  1. Roth, E., K. Jeon, and G. Stacey.  1988.  Homology in endosymbiotic systems:  The term "symbiosome".  In:Palacios, R. and D. P. Verma (eds.)  Molecular Genetics of Plant Microbe Interactions, 1988. American Phytopathological Society Press, Minnesota. pp. 220-225.

 

  1. Stacey, G., M.G. Schell, and N. Deshmane. 1989.  Determinants of host specificity in the Bradyrhizobium japonicum-soybean symbiosis. In Lugtenberg, B., ed., Signal Molecules in Plants and Plant-Microbe Interactions, Springer-Verlag, Berlin, pp. 395-399.

 

  1. Gerhold, D. and G. Stacey.  1990.  Recent advances in molecular biology techniques for studying phytosymbiotic microbes, pp. 51- 84.  In "Biotechnology of Plant-Microbe Interactions". J.P. Nakas and C, Hagedorn (eds.)  McGraw-Hill Publ., New York.

 

  1. Smit, G. and G. Stacey. 1990. Adhesion of bacteria to plant cells: Role of specific interactions versus hydrophobicity. pp. 179-210, In R.J. Doyle and Rosenberg, M. (eds.) Microbial Cell Surface Hydrophobicity. ASM Press, Washington, D.C.

 

  1. Roberts, D.M., S.H. Oh, L. Besl, C.D. Weaver, and G. Stacey. 1990. Attenuation of calmodulin-dependent NAD kinase activation by posttranslational methylation.  Randall, D.D. and D. G. Blevins (eds.), Current Topics in Plant Biochemistry and Physiology, 1990; Volume 9, Plant Protein Phosphorylation, Protein Kinases, Calcium and Calmodulin. Univ. of Missouri Press.

 

  1. Stacey, G. 1990. Compilation of the nod, fix, and nif genes of rhizobia and information concerning their function. In Gresshoff, P., E. Roth, G. Stacey, and W.E. Newton (eds.), Nitrogen Fixation: Achievements and Objectives, Chapman and Hall Publ., New York-London.

 

  1. Smit, G., D. Buckner, V. Puvanesarajah, R.W. Carlson, and G. Stacey. 1990. Purification of Bradyrhizobium nod-gene inducers from peanut. ibid.

 

  1. Smit, G., V. Puvanesarajah, R.W. Carlson, and G. Stacey. 1990. Bradyrhizobium japonicum nodD can specifically be induced by soybean seed extract compounds which do not induce the nodYABC genes. ibid.

 

  1. Carlson, R.W., Lakshmi, B., Bhat, U.R., and G. Stacey. 1990. Isolation and analysis of the lipopolysaccharides from symbiotic mutants of B. japonicum. ibid.

 

        24.      Wang, S.-P. and G. Stacey. 1990. A divergent nod box sequence is essential for nodD1 induction in B. japonicum. ibid.

 

  1. Chun, J.-Y. and G. Stacey. 1990. Genetic analysis of two symbiotic mutants of Bradyrhizobium japonicum. ibid.

 

  1. Luka, S. and G. Stacey. 1990. Characterization of a new host-inducible genetic locus in Bradyrhizobium japonicum. ibid. 

 

  1. Barbour, W.M., M.G. Schell, and G. Stacey. 1990. Construction of broad host range NPTII reporter vectors and their use in analysis of constitutive and inducible promoters in Bradyrhizobium japonicum USDA110. ibid.

 

  1. Hatterman, D.R. and G. Stacey. 1990.  Efficient high voltage electroporation of Bradyrhizobium japonicum. ibid.

 

  1. Sutton, E., E. Roth, and G. Stacey. 1990. Plasmodesmata frequency selectively drops as infected soybean-nodule cells mature. ibid.

 

  1. Weaver, C.D., G. Stacey, and D.M. Roberts. 1990. Phosphorylation of nodulin-26 by a calcium-dependent protein kinase. ibid.

 

31.  Roth, L.E. and G. Stacey. 1991. Rhizobium-Legume Symbiosis. pp. 255-301, In Dworkin, M. (ed.), Microbial Cell-Cell Interactions, ASM Press, Washington, D.C.

 

  1. Barbour, M., S.-P. Wang, and G. Stacey. 1991. The Molecular Genetics of Bradyrhizobium symbioses. In Stacey, G., R.H. Burris, and H.J. Evans. 1991. Biological Nitrogen Fixation. Chapman and Hall Publ., New York.

 

  1. Stacey, G., M.G. Schell, A. Sharma, S. Luka, G. Smit, and S.-P. Wang. 1991. Genetics of host specific nodulation by Bradyrhizobium japonicum. pp. 156-161, In Hennecke, H. and D.P.S. Verma (eds.), Advances in Molecular Genetics of Plant-Microbe Interactions, Kluwer Academic Publ., Dordrecht, The Netherlands.

 

  1. Schmidt, J., M. John, U. Wieneke, G. Stacey, H. Rohrig, and J. Schell. 1991. Studies on the function of Rhizobium meliloti nodulation genes, pp. 150-155, In Hennecke, H. and D.P.S. Verma (eds.), Advances in Molecular Genetics of Plant-Microbe Interactions, Kluwer Academic Publ., Dordrecht, The Netherlands.

 

  1. Stacey, G. 1992. Molecular signaling in the Bradyrhizobium japonicum-soybean symbiosis, pp. 45-54, In Gresshoff, P.M. (ed.), Plant Biotechnology and Development, CRC Press, Boca Raton, FL, USA.

 

  1. Sanjuan, J., S. Luka, and G. Stacey. 1993. Genetic maps of Rhizobium and Bradyrhizobium species. In O'Brien, S.J. (ed.), Genetic Maps, 6th Edition, Cold Spring Harbor Laboratory Press, New York, pp. 2.136-2.145.

 

  1. Sanjuan, J., R.W. Carlson, U.R. Bhat, H. Spaink, T. van Brussel, T. Stokkerman, K. Peters, J. Glushka, B.J.J. Lugtenberg, and G. Stacey. 1993. Bradyrhizobium japonicum strains produce multiple 2-O-methylfucose-containing lipo-oligosaccharide nodulation signals. In Palacios, R. et al. (eds.), Proc. Int. Cong. of Biological Nitrogen Fixation, Cancun, Mexico, Dec. 6-12, 1992 (in press).

 

  1. Luka, S. and Stacey, G. 1992. nolMNO are part of the nodYABCSUIJ transcript in Bradyrhizobium japonicum. ibid.

 

  1. Rice, S., Bieber, J., Chun, J.-Y., Stacey, G., and Lampson, B. 1992. Diversity of retron elements among a population of rhizobia. ibid.

 

  1. Stacey, G., J. Sanjuan, H. Spaink, T. van Brussel, B.J.J. Lugtenburg, J. Glushka, and R.W. Carlson. 1993. Rhizobial lipo-polysaccharides: novel plant growth regulators. In Gresshoff, P. (ed.), Plant Response to the Environment, CRC Press, Boca Raton.

 

  1. Sanjuan, J., R.W. Carlson, T.C. Dockendorff, S. Luka, and G. Stacey. 1993. Regulacion y funciones de los genes de la nodulacion en Bradyrhizobium japonicum. Libro de Resumenes, VI Reunion Nacional de Fijacion de Nitrogeno, Sociedad Espanola de Fijacion de Nitrogeno.

 

        42.  Stacey, G. 1996. The Bradyrhizobium japonicum -soybean symbiosis: Can basic research findings be used for practical benefit? In Hungria, M., Balota, E.L. , Colozzi-Filho, A.,

                 and Andrade, D.S. (Eds.) Soil Microbiology: Challenges of the XXI Century (in Portugeese- Microbiologia do Solo: Desafios para o Seculo XXI), in press.

 

  1. Stacey, G., E. Minami, H. Kouchi, J.R. Cohn, and R.W. Carlson. 1995. Signal exchange during soybean nodulation by Bradyrhizobium japonicum. In: Nitrogen Fixation: Fundamentals and applications,  Tikhonovich, I.A., V.I. Romonov, and W.E. Newton (eds.), Kluwer Academic Publishers, The Netherlands.

 

  1. Zhang, Z., B. Scott, G. Stacey, and P.M. Gresshoff. 1995. Identification of early nodulation signals in Lotus japonicus. Page 323 In: Nitrogen Fixation: Fundamentals and applications,  Tikhonovich, I.A., V.I. Romonov, and W.E. Newton (eds.), Kluwer Academic Publishers, The Netherlands.

 

  1. Loh, J., M. Garcia, J. Yuen, and G. Stacey. 1996. Nod gene regulation in Bradyrhizobium japonicum. In. Stacey, G., B. Mullin, and P.M. Gresshoff (eds.), Biology of Plant-Microbe Interactions. IS-MPMI, St. Paul, MN, pp. 307-312.

 

  1. Steiner, H.-Y., W. Song, L. Zhang, F. Naider, J. Becker, and G. Stacey. 1997. Isolation of plant peptide transporter genes by yeast complementation. IN Gresshoff, P. (ed.), Technology Transfer of Plant Biotechnology, CRC Press, Boca Raton, pp. 167-176.

 

  1. Loh, J., J.P.-Y. Yuen, M.G. Stacey and G. Stacey. 1998. Unique aspects of nod gene expression in Bradyrhizobium japonicum. IN E. Martinez and G. Hernández (eds.). Highlights on nitrogen fixation research. Plenum Publ. Corp., New York, N.Y.

 

  1. Day, R. B., J.T. Loh, J. Cohn, and G. Stacey. 1999. Chapter 22. Signal exchange involved in the establishment of the Bradyrhizobium-legume symbiosis. IN Triplett, E. (eds). Prokaryotic Nitrogen Fixation: A Model System for the Analysis of a Biological Process. Horizon Scientific Press, Norfolk, England.

 

  1. Stacey, G., R.B. Day, J.R. Cohn, S. Koh, C.B. McAlvin and J. Loh. 1999. Nod signal recognition. IN Biology of Plant-Microbe Interactions, Vol. 2, de Wit, P.J.G.M., T. Bisseling, and W.J. Stiekema, eds., ISMPMI Press, St. Paul, MN. (in press).

 

  1. Stacey, G. 2000. Control of nodulation in legume symbiosis. Pp. 211-212. In Pedrosa, F.O., M. Hungria, M. G. Yates, and W.E. Newton, eds. Kluwer Academic Publishers, Dordrecht, The Netherlands.

 

  1. Reddy, P.M., R.J. Hernandez-Oane, H. Kouchi, G. Stacey and J.K. Ladha. 2000. Exploring the genetic potential of rice for forming symbiotic associations with rhizobia. Pp. 331-332.  In Pedrosa, F.O., M. Hungria, M. G. Yates, and W.E. Newton, eds. Kluwer Academic Publishers, Dordrecht, The Netherlands.

 

  1. Gary Stacey, R. Bradley Day, Jonathan Cohn,  Mitsuo Okada , Yuki Ito, Serry Koh , Senthil Ramu, Taesik Uhm, Douglas Cook and Naoto Shibuya . 2000. Nod factor reception. Pp. 227-230. . In Pedrosa, F.O., M. Hungria, M. G. Yates, and W.E. Newton, eds. Kluwer Academic Publishers, Dordrecht, The Netherlands.

 

  1. Day, R.B., C. McAlvin, S. Koh, and G. Stacey. 2000. Differential expression pattern of two apyrase cDNAs expressed in the roots of soybean (Glycine soja). Pp. 243. . In Pedrosa, F.O., M. Hungria, M. G. Yates, and W.E. Newton, eds. Kluwer Academic Publishers, Dordrecht, The Netherlands.

 

  1. Loh, J., S. T. Cassini, F.F. Oliveira, and G. Stacey. 2000. Expression of the Bradyrhizobium japonicum nolA gene in response to chemically distinct soybean inducers. Pp. 254. . In Pedrosa, F.O., M. Hungria, M. G. Yates, and W.E. Newton, eds. Kluwer Academic Publishers, Dordrecht, The Netherlands.

 

  1. Jonathan Cohn, Senthil Ramu, Taesik Uhm, Douglas Cook, R. Bradley Day, and Gary Stacey. 2000. Expression of an apyrase gene of Medicago truncatula is induced by rhizobia. Pp. 265. . In Pedrosa, F.O., M. Hungria, M. G. Yates, and W.E. Newton, eds. Kluwer Academic Publishers, Dordrecht, The Netherlands.

 

  1. Jeff Tomkins, Heather Smith, John Loh, Adam Judd, David Fisch, Gary Stacey, Mike Sadowsky, Rod Wing. 2000. Development of a physical map and sequence tag connector framework for the Bradyrhizobium japonicum genome. Pp. 298. . In Pedrosa, F.O., M. Hungria, M. G. Yates, and W.E. Newton, eds. Kluwer Academic Publishers, Dordrecht, The Netherlands.

 

  1. Gary Stacey. 2001. The symbiosome. In S. Brenner and J.H. Miller (eds.), Encyclopedia of Genetics. Academic Press, in press.

 

  1. Gary Stacey. 2001. Nodulation genes. In S. Brenner and J.H. Miller (eds.), Encyclopedia of Genetics. Academic Press, in press.

 

  1. Gary Stacey. 2001. The Nod box. In S. Brenner and J.H. Miller (eds.), Encyclopedia of Genetics. Academic Press, in press.

 

  1. G. Stacey, J. Loh, B. Zhang, Y.-H. Lee, C. Bickley, D. Lohar, G. Liao, G. Copley, M.G. Stacey. 2001. Signal exchange during the early events of soybean nodulation. In Finan, T. and W.E. Newton, eds. Kluwer Academic Publishers, Dordrecht, The Netherlands. (in press).

 

  1. Becker, J.M., V. Narita, A. Donhardt, M. Hauser, S. Koh, G. Stacey and F. Naider. 2001. Regulation and multiplicity of peptide transporters in model systems. In Lebl, M. and R.A. Houghten, eds. Peptides: The Wave of the Future. American Peptide Society.

 

  1. Torres, M.A. and G. Stacey. 2004. Physiology and Genetics of Rhizobia – Legume Nitrogen Fixation. IN A. Hemantaranjan, ed., Physiology, Biochemistry and Genetics of Nitrogen Fixation, Chapter 16, Jodhpur, India, Scientific Publ., p. 413-441.

 

  1. Stacey, G. and H.T. Nguyen 2004. Mapping and sequencing the gene-rich regions of the soybean genome. IN R. Wilson, H. T. Stalker, and E.C. Brummer, eds.,  Legume Crop Genomics, American Oil Chemist Society Press, Champaign, IL, pp.234-154.

 

  1. Stacey, G., J. Wan, B. Andersen, and R. Carlson. 2004. Bradyrhizobium japonicum genome sequence: will this information help solve field problems? IN Moscardi, F, C.B. Hoffmann-Campo, O.F. Saraiva, P.R. Galerani, F.C. Krzyzanowski, and M.C. Carrão-Panizzi, eds., Proceedings, VII World Soybean Research Conference, EMBRAPA, Londrina, PR, Brasil, pp. 509-516.

 

  1. Ganapathy, A., Wan, X-F., Da Gue, B., Wan, J., Thelen, J., Stacey, G., and Xu, D. (2004) Statistical assessment for mass-spec protein identification using peptide fingerprinting approach. Proceedings of 26th the Annual International Conference IEEE Engineering in Medicine and Biology Society (EMBS'04) Bioinformatics and Computational Biology September 1-5, 2004, San Francisco, USA, pp. 3051-3054.

 

  1. Stacey, G., Huang, S., Wan, J., Zou, J., Clough, S., Scheffler, B., Kim, S-Y., and Nguyen, H. (2004) DNA microarray and proteomic analysis of root hair infection, pp. 183-184, IN Proceedings 5th European Conference on Grain Legumes, 2nd International Conference on Legume Genomics and Genetics, 7-11 June, 2004, Dijon, France, Association Européenne de Recherche sur les Protéagineux, Paris, France.

 

  1.  Stacey G, Wan J (2006) Chitin oligosaccharide signaling in plants, pp. 42-57, IN Sanchez F, Quinto C, Lopez-Lara IM, Geiger O (eds.), Biology of Plant-Microbe Interactions, Volume 5, International Society for Molecular Plant-Microbe Interactdions, St. Paul, MN.

 

  1. Stacey, G. (2006) The Rhizobium-legume nitrogen fixing symbiosis, pp. 147-164, IN Bothe, H, Ferguson, S., Newton, W.E., eds., “Biology of the nitrogen cycle., Elsevier Publ., Amsterdam.

 

  1. Joshi T, Wan J, Palm CJ, Juneau K, Davis R, Southwick A, Ramonell KM, Stacey G, Xu D (2007) Bioinformatics Analyses of Arabidopsis thaliana Tiling Array Expression Data. In "Knowledge Discovery in Bioinformatics: Techniques, Methods and Application" edited by Yi Pan and Xiaohua (Tony) Hu, John Wiley and Sons, New York. In press.

 

  D. Other publications:

 

Rhizobium, the clever burglar. 1998. Trends in Microbiology (February issue, in press) (review of Martinez-Abarca, F. et al. (1998) Mol. Plant-Microbe Int. 11(2), in press)

 

Multicellular growth of bacteria. 1998. Trends in Microbiology 6 (7): 261. (review of Davies et al. (1998) Science 280: 295-298.

 

Oxygen Paradox. 1998. Trends in Microbiology 6 (11): 434. (Review of Bauer et al. (1998) J. Bacteriol. 180: 3853-3863).

 

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